Inference Model Output
(This section describes the location and contents of the additional output files produced during an inference model run)
Last updated
(This section describes the location and contents of the additional output files produced during an inference model run)
Last updated
During inference runs, an additional file type, llik
, is created, which is described in the section ;
These files contain the log-likelihoods of the model simulation for each subpopulation, as well as some diagnostics on acceptance.
The meanings of the columns are:
ll
- These values are the log-likelihoods of data given the model and parameter values for a single subpopulation (in subpop
column) ;
filename
- ...
subpop
- The values of this column are the names of the nodes from the geodata
file.
accept
- Either 0 or 1, depending on whether the parameters during this iteration of the simulation were accepted (1) or rejected (0) in that subpopulation ;
accept_avg
;
accept_prob
;
For inference runs, ...
flepiMoP produces one file per parallel slot, for both global and chimeric outputs...