> For the complete documentation index, see [llms.txt](https://iddynamics.gitbook.io/flepimop/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://iddynamics.gitbook.io/flepimop/model-inference.md).

# Model Inference

- [Inference Description](https://iddynamics.gitbook.io/flepimop/model-inference/inference-description.md): Methods for fitting model to data
- [Inference Implementation](https://iddynamics.gitbook.io/flepimop/model-inference/inference-implementation.md)
- [Specifying data source and fitted variables](https://iddynamics.gitbook.io/flepimop/model-inference/inference-implementation/specifying-data-source-and-fitted-variables.md)
- [(OLD) Configuration options](https://iddynamics.gitbook.io/flepimop/model-inference/inference-implementation/configuration-options.md)
- [(OLD) Configuration setup](https://iddynamics.gitbook.io/flepimop/model-inference/inference-implementation/old-configuration-setup.md)
- [Code structure](https://iddynamics.gitbook.io/flepimop/model-inference/inference-implementation/code-structure.md): Files where these algorithms are contained
- [Inference Model Output](https://iddynamics.gitbook.io/flepimop/model-inference/inference-model-output.md): (This section describes the location and contents of the additional output files produced during an inference model run)
- [Inference with EMCEE](https://iddynamics.gitbook.io/flepimop/model-inference/inference-with-emcee.md)


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